Statistics
1. Basic statistics information
| Item | Statistic |
|---|---|
| eccDNAs | 1270 |
| eccDNA genes (counted by ensembl ID) | 54901 |
| eccDNA-containing sample types | 8 |
| Total sample types | 11 |
| eccDNA-containing tissue types | 26 |
| Total tissue types | 30 |
| eccDNA-containing diseases/cancers | 42 |
| Total diseases/cancers | 57 |
| eccDNA size | 21 bp ~ 1024 Mb |
| eccDNA copy count | 1 ~ 160.2 |
| Segments per eccDNA | 1 ~ 99 |
| eccDNA genes per eccDNA | 0 ~ 19697 |
2. Distribution of eccDNAs based on sample types
| Sample type | Count |
|---|---|
| TP | 3014 |
| TM | 152 |
| Cancer tissue | 65 |
| Cancer cell line | 63 |
| TB | 40 |
| Cancer PDX | 25 |
| Cell culture | 16 |
| Unspecified | 10 |
| TR | 6 |
| Circulating tumor cells | 2 |
| FFPE | 2 |
3. Distribution of eccDNAs based on tissue types
| Tissue type | Count |
|---|---|
| Prostate | 307 |
| Blood | 256 |
| Liver | 252 |
| Pancreas | 221 |
| Kidney | 206 |
| Bronchus and lung | 193 |
| Pediatric brain | 188 |
| Brain | 187 |
| Breast | 180 |
| Skin | 173 |
| Head and neck | 164 |
| Stomach | 147 |
| Corpus uteri | 143 |
| Thyroid | 139 |
| Bladder | 112 |
| Esophagus | 112 |
| Colon | 91 |
| Ovary | 83 |
| Cervix uteri | 66 |
| Eye and adnexa | 50 |
| Bone | 37 |
| Retroperitoneum and peritoneum | 36 |
| Unspecified | 16 |
| Lung | 15 |
| Biliary tract | 11 |
| Hematopoietic_tissue | 6 |
| Central_nervous_system | 1 |
| Haematopoietic_and_lymphoid_tissue | 1 |
| Omentum | 1 |
| Soft_tissue | 1 |
4. Distribution of eccDNAs based on chromosomes
| # chromosomes | # eccDNAs |
|---|---|
| 1 chr | 1015 |
| 2 chrs | 128 |
| 3 chrs | 50 |
| 4 chrs | 29 |
| 5 chrs | 15 |
| 6 chrs | 12 |
| 7 chrs | 4 |
| 8 chrs | 6 |
| 9 chrs | 2 |
| 10 chrs | 2 |
| 11 chrs | 2 |
| 12 chrs | 3 |
| 14 chrs | 1 |
| 19 chrs | 1 |
| Chromosome | # eccDNA |
|---|---|
| chr1 | 42 |
| chr2 | 26 |
| chr3 | 28 |
| chr4 | 15 |
| chr5 | 14 |
| chr6 | 35 |
| chr7 | 310 |
| chr8 | 164 |
| chr9 | 20 |
| chr10 | 73 |
| chr11 | 101 |
| chr12 | 41 |
| chr13 | 13 |
| chr14 | 9 |
| chr15 | 9 |
| chr16 | 6 |
| chr17 | 54 |
| chr18 | 9 |
| chr19 | 11 |
| chr20 | 19 |
| chr21 | 3 |
| chr22 | 9 |
| chrX | 4 |
| multiChrs | 255 |